Publications

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2014
Molden RC, Goya J, Khan Z, Garcia BA.  2014.  Stable isotope labeling of phosphoproteins for large-scale phosphorylation rate determination. Molecular & Cellular Proteomics.
D. Grimes J, Ford TE, Colwell RR, Baker-Austin C, Martinez-Urtaza J, Subramaniam A, Capone DG.  2014.  Viewing Marine Bacteria, Their Activity and Response to Environmental Drivers from Orbit. Microbial Ecology. (38):489-500.
2013
Rashid A, Haley BJ, Rajabov M, Ahmadova S, Gurbanov S, Colwell RR, Huq A.  2013.  Detection of Vibrio cholerae in environmental waters including drinking water reservoirs of Azerbaijan. Environmental Microbiology Reports. (1):30-38.
Hasan NA, Ceccarelli D, Grim CJ, Taviani E, Choi J, Sadique A, Alam M, Siddique AK, R. Sack B, Huq A et al..  2013.  Distribution of Virulence Genes in Clinical and Environmental Vibrio cholerae Strains in Bangladesh. Applied and Environmental Microbiology. (18):5782-5785.
Bozo-Hurtado L, García-Amado M, Chistoserdov A, Varela R, Narvaez J, Colwell RR, Suárez P.  2013.  Identification of bacteria in enrichment cultures of sulfate reducers in the Cariaco Basin water column employing Denaturing Gradient Gel Electrophoresis of 16S ribosomal RNA gene fragments. Aquatic Biosystems. 9(1):17.
Li I, Froehlich J, Larsen JE, Grevet C, Ramirez E.  2013.  Personal informatics in the wild: hacking habits for health & happiness. CHI '13 Extended Abstracts on Human Factors in Computing Systems. :3179-3182.
Khan Z, Ford MJ, Cusanovich DA, Mitrano A, Pritchard JK, Gilad Y.  2013.  Primate Transcript and Protein Expression Levels Evolve Under Compensatory Selection Pressures. Science. 342(6162):1100-1104.
Boyd-Graber J, Glasgow K, Zajac JS.  2013.  Spoiler Alert: Machine Learning Approaches to Detect Social Media Posts with Revelatory Information.
Bitansky N, Dachman-Soled D, Garg S, Jain A, Kalai YTauman, López-Alt A, Wichs D.  2013.  Why “Fiat-Shamir for Proofs” Lacks a Proof. Theory of Cryptography. :182-201.
2012
Lin HC, Goldstein S, Mendelowitz L, Zhou S, Wetzel J, Schwartz DC, Pop M.  2012.  AGORA: Assembly Guided by Optical Restriction Alignment. BMC bioinformatics. 13(1)
Svec P, Gupta SK.  2012.  Automated synthesis of action selection policies for unmanned vehicles operating in adverse environments. Autonomous Robots. 32(2):149-164.
Roy A, Halder B, Garain U, Doermann D.  2012.  Automatic Authentication of Banknotes. IEEE Transactions on Information Forensics & Security.
Lee SHee, Kalejta RF, Kerry J, Semmes OJohn, O’Connor CM, Khan Z, Garcia BA, Shenk T, Murphy E.  2012.  BclAF1 restriction factor is neutralized by proteasomal degradation and microRNA repression during human cytomegalovirus infection. Proceedings of the National Academy of Sciences. 109(24):9575-9580.
Gevers D, Pop M, Schloss PD, Huttenhower C.  2012.  Bioinformatics for the Human Microbiome Project. PLoS Computational Biology. 8(11):e1002779.
Gopalan R, Taheri S, Turaga P, Chellappa R.  2012.  A Blur-robust Descriptor with Applications to Face Recognition. IEEE Transactions on Pattern Analysis and Machine Intelligence. PP(99):1-1.
Dachman-Soled D, Gennaro R, Krawczyk H, Malkin T.  2012.  Computational Extractors and Pseudorandomness. Theory of Cryptography. :383-403.
Senoh M, Ghosh‐Banerjee J, Ramamurthy T, Colwell RR, Miyoshi S-ichi, Nair BG, Takeda Y.  2012.  Conversion of viable but nonculturable enteric bacteria to culturable by co‐culture with eukaryotic cells. Microbiology and Immunology. 56(5):342-345.
Liu B, Faller LL, Klitgord N, Mazumdar V, Ghodsi M, Sommer DD, Gibbons TR, Treangen TJ, Chang YC, Li S.  2012.  Deep Sequencing of the Oral Microbiome Reveals Signatures of Periodontal Disease. PloS one. 7(6)
Liu B, Faller LL, Klitgord N, Mazumdar V, Ghodsi M, Sommer DD, Gibbons TR, Treangen TJ, Chang YC, Li S.  2012.  Deep Sequencing of the Oral Microbiome Reveals Signatures of Periodontal Disease. PloS one. 7(6)
Johnson CN, Bowers JC, Griffitt KJ, Molina V, Clostio RW, Pei S, Laws E, Paranjpye RN, Strom MS, Chen A et al..  2012.  Ecology of Vibrio parahaemolyticus and Vibrio vulnificus in the Coastal and Estuarine Waters of Louisiana, Maryland, Mississippi, and Washington (United States). Applied and Environmental Microbiology. (20):7249-7257.
Johnson CN, Bowers JC, Griffitt KJ, Molina V, Clostio RW, Pei S, Laws E, Paranjpye RN, Strom MS, Chen A et al..  2012.  Ecology of Vibrio parahaemolyticus and Vibrio vulnificus in the Coastal and Estuarine Waters of Louisiana, Maryland, Mississippi, and Washington (United States). Applied and Environmental Microbiology. (20):7249-7257.
Gumerov NA, Duraiswami R.  2012.  Efficient FMM accelerated vortex methods in three dimensions via the Lamb-Helmholtz decomposition. arXiv:1201.5430.
Goodrich MT, Papamanthou C, Nguyen D, Tamassia R, Lopes CVideira, Ohrimenko O, Triandopoulos N.  2012.  Efficient Verification of Web-content Searching Through Authenticated Web Crawlers. Proc. VLDB Endow.. 5(10):920-931.
Schwartz WR, Guo H, Choi J, Davis LS.  2012.  Face Identification Using Large Feature Sets. Image Processing, IEEE Transactions on. 21(4):2245-2255.
Methé BA, Nelson KE, Pop M, Creasy HH, Giglio MG, Huttenhower C, Gevers D, Petrosino JF, Abubucker S, Badger JH.  2012.  A framework for human microbiome research. Nature. 486:215-221.

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