Publications

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Journal Articles
Lee B, Parr CS, Plaisant C, Bederson BB, Veksler VD, Gray WD, Kotfila C.  2006.  TreePlus: Interactive Exploration of Networks with Enhanced Tree Layouts. Visualization and Computer Graphics, IEEE Transactions on. 12(6):1414-1426.
Singh LN, Wang L-S, Hannenhalli S.  2007.  TREMOR—a tool for retrieving transcriptional modules by incorporating motif covariance. Nucleic Acids Research. 35(21):7360-7371.
Tilghman S, Astin HS, Brinkley W, Chilton MD, Cummings MP, Ehrenberg RG, Fox MF, Glenn K, Green PJ, Hans S et al..  1998.  Trends in the early careers of life scientists - Preface and executive summary. Mol Biol Cell. 9(11):3007-3015.
Phang KY, Foster JS, Hicks MW, Sazawal V.  2009.  Triaging Checklists: a Substitute for a PhD in Static Analysis. Evaluation and Usability of Programming Languages and Tools (PLATEAU) PLATEAU 2009.
Khuller S, Mitchell JSB.  1990.  On a triangle counting problem. Information Processing Letters. 33(6):319-321.
Stewart G.W.  1997.  The Triangular Matrices of Gaussian Elimination and Related Decompositions. IMA Journal of Numerical Analysis. 17(1):7-16.
Litwin WA, Roussopoulos N, Levy G, Hong W.  1991.  Trie hashing with controlled load. IEEE Transactions on Software Engineering. 17(7):678-691.
Sengupta B, Cleaveland R.  2002.  Triggered message sequence charts. ACM SIGSOFT Software Engineering Notes. 27:167-167.
Shneiderman B, Hewett T.  2000.  A Trip Report on Creativity and Cognition 1999: An Insider's Report on a Far Out Conference. SIGCHI BULLETIN. 32(1):43-46.
Zheleva E, Kolcz A, Getoor L.  2008.  Trusting spam reporters: A reporter-based reputation system for email filtering. ACM Transactions on Information Systems (TOIS). 27(1):3:1–3:27-3:1–3:27.
Perlis D.  1989.  Truth and meaning (research note). Artificial intelligence. 39(2):245-250.
Bringaud F, Bartholomeu DC, Blandin G, Delcher A, Baltz T, El-Sayed NM, Ghedin E.  2006.  The Trypanosoma cruzi L1Tc and NARTc non-LTR retrotransposons show relative site specificity for insertion. Molecular biology and evolution. 23(2):411-411.
Westenberger S, Cerqueira G, El-Sayed NM, Zingales B, Campbell D, Sturm N.  2006.  Trypanosoma cruzi mitochondrial maxicircles display species- and strain-specific variation and a conserved element in the non-coding region. BMC Genomics. 7(1):60-60.
Bartholomeu DC, Silva RA, Galvão LMC, El-Sayed NM, Donelson JE, Teixeira SMR.  2002.  Trypanosoma cruzi: RNA structure and post-transcriptional control of tubulin gene expression. Experimental Parasitology. 102(3-4):123-133.
Sethupathy P, Hannenhalli S.  2008.  A Tutorial of the Poisson Random Field Model in Population Genetics. Advances in Bioinformatics. 2008:1-9.
Getoor L.  2005.  Tutorial on statistical relational learning. Inductive Logic Programming. :415-415.
Wong PC, Chen C, Görg C, Shneiderman B, Stasko J, Thomas J.  2011.  Tutorial-Graph Analytics — Lessons Learned and Challenges Ahead. IEEE Computer Graphics and Applications. 31(5):18-18.
Zhang X-N, Mount SM.  2009.  Two Alternatively Spliced Isoforms of the Arabidopsis SR45 Protein Have Distinct Roles during Normal Plant Development. Plant PhysiologyPlant Physiol.. 150(3):1450-1458.
Brosey M, Shneiderman B.  1978.  Two experimental comparisons of relational and hierarchical database models. International Journal of Man-Machine Studies. 10(6):625-637.
Gannon JD, Zelkowitz MV.  1987.  Two implementation models of abstract data types. Computer Languages. 12(1):21-25.
Seydou F, Gumerov NA, Duraiswami R.  2003.  Two methods for solving a 3D acoustic inverse scattering problem. The Journal of the Acoustical Society of America. 113(4):2191-2191.
Katz J, MacKenzie P, Taban G, Gligor V.  2005.  Two-server password-only authenticated key exchange. Applied Cryptography and Network Security. :175-206.
Katz J, MacKenzie P, Taban G, Gligor V.  2012.  Two-server password-only authenticated key exchange. Journal of Computer and System Sciences. 78(2):651-669.
Skalka C, Smith S, Van Horn D.  2005.  A Type and Effect System for Flexible Abstract Interpretation of Java: (Extended Abstract). Electronic Notes in Theoretical Computer Science. 131:111-124.
Cleaveland R, Panangaden P.  1988.  Type theory and concurrency. International Journal of Parallel Programming. 17(2):153-206.

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