Publications
2004. A Note on Efficient Computation of Haplotypes via Perfect Phylogeny. Journal of Computational Biology. 11(5):858-866.
2004. Visualization and analysis of microarray and gene ontology data with treemaps. BMC Bioinformatics. 5(1):84-84.
2004. Low-dimensional embedding with extra information. Proceedings of the twentieth annual symposium on Computational geometry. :320-329.
1999. Simple: A Methodology for Programming High Performance Algorithms on Clusters of Symmetric Multiprocessors (SMPs). Journal of Parallel and Distributed Computing. 58(1):92-108.
1995. Parallel algorithms for image histogramming and connected components with an experimental study (extended abstract). ACM SIGPLAN Notices. 30(8):123-133.
1995. Scalable data parallel algorithms for texture synthesis using Gibbs random fields. Image Processing, IEEE Transactions on. 4(10):1456-1460.
1998. Parallel Algorithms for Image Histogramming and Connected Components with an Experimental Study. UMIACS-TR-94-133
1996. Practical parallel algorithms for personalized communication and integer sorting. Journal of Experimental Algorithmics (JEA). 1
1998. Scalable Data Parallel Algorithms for Texture Synthesis and Compression using Gibbs Random Fields. UMIACS-TR-93-80
1996. Parallel algorithms for image enhancement and segmentation by region growing, with an experimental study. The Journal of Supercomputing. 10(2):141-168.
1996. Practical parallel algorithms for dynamic data redistribution, median finding, and selection. Parallel Processing Symposium, 1996., Proceedings of IPPS '96, The 10th International. :292-301.
2007. A Secure DHT via the Pigeonhole Principle. Technical Reports of the Computer Science Department, CS-TR-4884.
2009. Identifying close friends on the internet. Proc. of workshop on Hot Topics in Networks (HotNets-VIII).
2009. Persona: an online social network with user-defined privacy. Proceedings of the ACM SIGCOMM 2009 conference on Data communication. :135-146.
2005. Unsupervised learning applied to progressive compression of time-dependent geometry. Computers & Graphics. 29(3):451-461.
1989. Some aspects of parallel implementation of the finite-element method on message passing architectures. Journal of Computational and Applied Mathematics. 27(1-2):157-187.
1982. Isomorphism of graphs with bounded eigenvalue multiplicity. Proceedings of the fourteenth annual ACM symposium on Theory of computing. :310-324.
2014. Phylodynamic Analysis of Clinical and Environmental Vibrio cholerae Isolates from Haiti Reveals Diversification Driven by Positive Selection. mBio. (6)
1987. Tight comparison bounds on the complexity of parallel sorting. SIAM J. Comput.. 16(3):458-464.
2011. Maximum bipartite flow in networks with adaptive channel width. Theoretical Computer Science. 412(24):2577-2587.
2012. BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics. Systematic BiologySyst Biol. 61(1):170-173.
2001. Evolving columnar circuitry for lateral cortical inhibition. Neural Networks, 2001. Proceedings. IJCNN'01. International Joint Conference on. 1:278-283.