Publications
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2005. Interactive Exploration of Multidimensional Microarray Data: Scatterplot Ordering, Gene Ontology Browser, and Profile Search (2003). Institute for Systems Research Technical Reports.
2005. Building a Coherent Data Pipeline in Microarray Data Analyses: Optimization of Signal/Noise Ratios Using an Interactive Visualization Tool and a Novel Noise Filtering Method (2003). Institute for Systems Research Technical Reports.
2004. A Rank-by-Feature Framework for Unsupervised Multidimensional Data Exploration Using Low Dimensional Projections. IEEE Symposium on Information Visualization, 2004. INFOVIS 2004. :65-72.
2004. Interactively Optimizing Signal-to-Noise Ratios in Expression Profiling: Project-Specific Algorithm Selection and Detection P-Value Weighting in Affymetrix Microarrays. BioinformaticsBioinformatics. 20(16):2534-2544.
2005. A Rank-by-Feature Framework for Interactive Exploration of Multidimensional Data (2004). Institute for Systems Research Technical Reports.
2003. Understanding Hierarchical Clustering Results by Interactive Exploration of Dendrograms: A Case Study with Genomic Microarray Data. Technical Reports from UMIACS.
2005. A Knowledge Integration Framework for Information Visualization (2004). Institute for Systems Research Technical Reports.
2002. Interactively exploring hierarchical clustering results [gene identification]. Computer. 35(7):80-86.
2005. A Rank-by-Feature Framework for Interactive Exploration of Multidimensional Data. Information VisualizationInformation Visualization. 4(2):96-113.
2006. Knowledge discovery in high-dimensional data: case studies and a user survey for the rank-by-feature framework. IEEE Transactions on Visualization and Computer Graphics. 12(3):311-322.
2012. Conversion of viable but nonculturable enteric bacteria to culturable by co‐culture with eukaryotic cells. Microbiology and Immunology. 56(5):342-345.
2010. Conversion of viable but nonculturable Vibrio cholerae to the culturable state by co‐culture with eukaryotic cells. Microbiology and Immunology. 54(9):502-507.
2005. Executable requirements specifications using triggered message sequence charts. Distributed Computing and Internet Technology. :482-493.
2005. An integrated framework for scenarios and state machines. Integrated Formal Methods. :366-385.
2003. Towards formal but flexible scenarios. 2nd International Workshop on Scenarios and State Machines: Models, Algorithms and Tools.
2009. PrDB: managing and exploiting rich correlations in probabilistic databases. The VLDB Journal. 18(5):1065-1090.
2007. Representing Tuple and Attribute Uncertainty in Probabilistic Databases. Seventh IEEE International Conference on Data Mining Workshops, 2007. ICDM Workshops 2007. :507-512.
2005. Modeling image processing systems with homogeneous parameterized dataflow graphs. Acoustics, Speech, and Signal Processing, 2005. Proceedings. (ICASSP '05). IEEE International Conference on. 5:v/133-v/136Vol.5-v/133-v/136Vol.5.
2005. Computer vision on FPGAs: Design methodology and its application to gesture recognition. Computer Vision and Pattern Recognition-Workshops, 2005. CVPR Workshops. IEEE Computer Society Conference on. :133-133.
2006. Cost-sensitive learning with conditional Markov networks. Proceedings of the 23rd international conference on Machine learning. :801-808.
2009. Bisimulation-based approximate lifted inference. Proceedings of the Twenty-Fifth Conference on Uncertainty in Artificial Intelligence. :496-505.