Publications
1993. Evaluating product machinability for concurrent engineering. Concurrent Engineering: Contemporary Issues and Modern Design Tools. :264-279.
2010. Exploring Biological Network Dynamics with Ensembles of Graph Partitions. Proceedings of the PSB Pacific Symposium on Biocomputing. 15:166-177.
2009. Finding Biologically Accurate Clusterings in Hierarchical Decompositions Using the Variation of Information. Lecture Notes in Computer Science: Research in Computational Molecular Biology. 5541:400-417.
2010. Finding Biologically Accurate Clusterings in Hierarchical Tree Decompositions Using the Variation of Information. Journal of Computational Biology. 17(3):503-516.
2010. The power of protein interaction networks for associating genes with diseases. Bioinformatics. 26(8):1057-1057.
2009. Finding Biologically Accurate Clusterings in Hierarchical Tree Decompositions Using the Variation of Information. Research in Computational Molecular Biology. 5541:400-417.
2009. Revealing biological modules via graph summarization. Journal of Computational Biology. 16(2):253-264.
2009. Resonance: dynamic access control for enterprise networks. Proceedings of the 1st ACM workshop on Research on enterprise networking. :11-18.
2011. Cloud software upgrades: Challenges and opportunities. 2011 International Workshop on the Maintenance and Evolution of Service-Oriented and Cloud-Based Systems (MESOCA) . :1-10.
2005. Understanding source code evolution using abstract syntax tree matching. Proceedings of the 2005 international workshop on Mining software repositories. :1-5.
2008. Contextual effects for version-consistent dynamic software updating and safe concurrent programming. Proceedings of the 35th annual ACM SIGPLAN-SIGACT symposium on Principles of programming languages. :37-49.
2003. Genetic consequences of ecological reserve design guidelines: An empirical investigation. Conserv Genet. 4(4):427-439.