Publications
2000. An empirical study of regression test application frequency. Proceedings of the 22nd international conference on Software engineering - ICSE '00. :126-135.
2007. Principles for designing data-/compute-intensive distributed applications and middleware systems for heterogeneous environments. Journal of Parallel and Distributed Computing. 67(7):755-771.
1998. Salient Frame Detection for Molecular Dynamics Simulations. Scientific Visualization: Interactions, Features, Metaphors. 2:160-175.
2006. Resource Discovery Techniques in Distributed Desktop Grid Environments. Proceedings of the 7th IEEE/ACM International Conference on Grid Computing. :9-16.
2008. Trade-offs in matching jobs and balancing load for distributed desktop grids. Future Generation Computer Systems. 24(5):415-424.
2009. Streaming model based volume ray casting implementation for Cell Broadband Engine. Scientific Programming. 17(1):173-184.
2005. An empirical study of regression test application frequency. Software Testing, Verification and Reliability. 15(4):257-279.
2011. Communicating with Caps: Managing Usage Caps in Home Networks. SIGCOMM Comput. Commun. Rev.. 41(4):470-471.
2011. Temperature regulation of virulence factors in the pathogen Vibrio coralliilyticus. The ISME Journal. 6(4):835-846.
2008. Implicit Flows: Can’t Live with ‘Em, Can’t Live without ‘Em. Information Systems SecurityInformation Systems Security. 5352:56-70.
1997. Satellite DNA repeat sequence variation is low in three species of burying beetles in the genus ıt Nicrophorus (Coleoptera: Silphidae). Mol Biol Evol. 14(11):1088-1095.
2006. A compact mathematical programming formulation for DNA motif finding. Combinatorial Pattern Matching. :233-245.
2009. 2009 Swine-Origin Influenza A (H1N1) Resembles Previous Influenza Isolates. PLoS ONEPLoS ONE. 4(7):e6402-e6402.
2010. Assembly complexity of prokaryotic genomes using short reads. BMC Bioinformatics. 11(1):21-21.
2007. A unified model explaining the offsets of overlapping and near-overlapping prokaryotic genes. Molecular biology and evolution. 24(9):2091-2091.
2011. A cost-aggregating integer linear program for motif finding. Journal of Discrete Algorithms. 9(4):326-334.
2014. Vibrio metoecus sp. nov., a close relative of Vibrio cholerae isolated from coastal brackish ponds and clinical specimens. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY. (Pt 95616795215116120545121):3208-3214.
2003. The Dog Genome: Survey Sequencing and Comparative Analysis. ScienceScience. 301(5641):1898-1903.
2011. Interaction of Vibrio cholerae non-O1/non-O139 with Copepods, Cladocerans and Competing Bacteria in the Large Alkaline Lake Neusiedler See, Austria. Microbial ecology. 61(3):496-506.