Publications

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Kirkness EF, Bafna V, Halpern AL, Levy S, Remington K, Rusch DB, Delcher AL, Pop M, Wang W, Fraser CM et al..  2003.  The Dog Genome: Survey Sequencing and Comparative Analysis. ScienceScience. 301(5641):1898-1903.
Kirchberger P.C, Turnsek M., Hunt D.E, Haley B.J, Colwell RR, Polz M.F, Tarr C.L, Boucher Y..  2014.  Vibrio metoecus sp. nov., a close relative of Vibrio cholerae isolated from coastal brackish ponds and clinical specimens. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY. (Pt 95616795215116120545121):3208-3214.
Kingsford C, Salzberg SL.  2008.  What are decision trees? Nature biotechnology. 26(9):1011-1011.
Kingsford C, Zaslavsky E, Singh M.  2006.  A compact mathematical programming formulation for DNA motif finding. Combinatorial Pattern Matching. :233-245.
Kingsford C, Zaslavsky E, Singh M.  2011.  A cost-aggregating integer linear program for motif finding. Journal of Discrete Algorithms. 9(4):326-334.
Kingsford C, Marçais G.  2009.  A synthesis for exactly 3-edge-connected graphs. Arxiv preprint arXiv:0905.1053.
Kingsford C, Nagarajan N, Salzberg SL.  2009.  2009 Swine-Origin Influenza A (H1N1) Resembles Previous Influenza Isolates. PLoS ONEPLoS ONE. 4(7):e6402-e6402.
Kingsford C, Schatz MC, Pop M.  2010.  Assembly complexity of prokaryotic genomes using short reads. BMC Bioinformatics. 11(1):21-21.
Kingsford C, Delcher AL, Salzberg SL.  2007.  A unified model explaining the offsets of overlapping and near-overlapping prokaryotic genes. Molecular biology and evolution. 24(9):2091-2091.
King D, Hicks B, Hicks MW, Jaeger T.  2008.  Implicit Flows: Can’t Live with ‘Em, Can’t Live without ‘Em. Information Systems SecurityInformation Systems Security. 5352:56-70.
King LM, Cummings MP.  1997.  Satellite DNA repeat sequence variation is low in three species of burying beetles in the genus ıt Nicrophorus (Coleoptera: Silphidae). Mol Biol Evol. 14(11):1088-1095.
Kimes NE, Grim CJ, Johnson WR, Hasan NA, Tall BD, Kothary MH, Kiss H, Munk CA, Tapia R, Green L et al..  2011.  Temperature regulation of virulence factors in the pathogen Vibrio coralliilyticus. The ISME Journal. 6(4):835-846.
Kim J-S, Andrade H, Sussman A.  2005.  Comparing the Performance of High-Level Middleware Systems in Shared and Distributed Memory Parallel Environments. Parallel and Distributed Processing Symposium, 2005. Proceedings. 19th IEEE International. :30-30.
Kim K, Chalidabhongse TH, Harwood D, Davis LS.  2005.  Real-time foreground-background segmentation using codebook model. Real-time imaging. 11(3):172-185.
Kim J-S, Nam B, Marsh M, Keleher P, Bhattacharjee B, Richardson D, Wellnitz D, Sussman A.  2007.  Creating a Robust Desktop Grid using Peer-to-Peer Services. Parallel and Distributed Processing Symposium, 2007. IPDPS 2007. IEEE International. :1-7.
Kim J-M, Porter A, Rothermel G.  2000.  An empirical study of regression test application frequency. Proceedings of the 22nd international conference on Software engineering - ICSE '00. :126-135.
Kim J-S, Andrade H, Sussman A.  2007.  Principles for designing data-/compute-intensive distributed applications and middleware systems for heterogeneous environments. Journal of Parallel and Distributed Computing. 67(7):755-771.
Kim Y, Patro R, Ip CY, O’Leary DP, Anishkin A, Sukharev S, Varshney A.  1998.  Salient Frame Detection for Molecular Dynamics Simulations. Scientific Visualization: Interactions, Features, Metaphors. 2:160-175.
Kim J, Oard D, Soergel D.  2003.  Searching large collections of recorded speech: A preliminary study. Proceedings of the American Society for Information Science and Technology. 40(1):330-339.
Kim J-S, Keleher P, Marsh M, Bhattacharjee B, Sussman A.  2007.  Using Content-Addressable Networks for Load Balancing in Desktop Grids. UMIACS-TR-2007-16
Kim J, Oard D, Romanik K.  2001.  User modeling for information access based on implicit feedback. 3rd Symposium of ISKO-France, Information Filtering and Automatic Summarisation in networds.
Kim K, Harwood D, Davis LS.  2005.  Background updating for visual surveillance. Advances in Visual Computing. :337-346.
Kim H, Sundaresan S, Chetty M, Feamster N, W. Edwards K.  2011.  Communicating with Caps: Managing Usage Caps in Home Networks. SIGCOMM Comput. Commun. Rev.. 41(4):470-471.
Kim J, JaJa JF.  2006.  A Novel Information-Aware Octree for the Visualization of Large Scale Time-Varying Data. UMIACS-TR-2006-03
Kim J, JaJa JF.  2006.  Information-aware HyperOctree for effective isosurface rendering of large scale time-varying data. UMIACS-TR-2006-00

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