Publications
2009. Collective classification for text classification. Text Mining: Classification, Clustering, and ApplicationsText Mining: Classification, Clustering, and Applications. :51-69.
2006. Inferring formal titles in organizational email archives. Proc. of the ICML Workshop on Statistical Network Analysis.
2010. A survey of link mining tasks for analyzing noisy and incomplete networks. Link Mining: Models, Algorithms, and Applications. :107-133.
2007. Inferring organizational titles in online communication. Statistical Network Analysis: Models, Issues, and New Directions. :179-181.
2003. Improving access to multi-dimensional self-describing scientific datasets. 3rd IEEE/ACM International Symposium on Cluster Computing and the Grid, 2003. Proceedings. CCGrid 2003. :172-179.
2004. A Comparative Study of Spatial Indexing Techniques for Multidimensional Scientific Datasets. Scientific and Statistical Database Management, International Conference on. :171-171.
2006. DiST: fully decentralized indexing for querying distributed multidimensional datasets. Parallel and Distributed Processing Symposium, 2006. IPDPS 2006. 20th International.
2006. Multiple range query optimization with distributed cache indexing. Proceedings of the 2006 ACM/IEEE conference on Supercomputing. :100–es-100–es.
2005. Spatial indexing of distributed multidimensional datasets. IEEE International Symposium on Cluster Computing and the Grid, 2005. CCGrid 2005. 2:743-750Vol.2-743-750Vol.2.
2006. Identifying domain-specific defect classes using inspections and change history. Proceedings of the 2006 ACM/IEEE international symposium on Empirical software engineering. :346-355.
2001. Evaluating the XMT parallel programming model. High-Level Parallel Programming Models and Supportive Environments. :95-108.
2000. Evaluating multi-threading in the prototype XMT environment. Proc. 4th Workshop on Multi-Threaded Execution, Architecture and Compliation (MTEAC2000).
2003. Towards a first vertical prototyping of an extremely fine-grained parallel programming approach. Theory of Computing Systems. 36(5):521-552.
2012. Role of Shrimp Chitin in the Ecology of Toxigenic Vibrio cholerae and Cholera Transmission. Frontiers in Microbiology. 2:260
2002. Image Restoration through Subimages and Confidence Images. Electronic Transactions on Numerical Analysis. 13:22-37.
1998. Restoring Images Degraded by Spatially Variant Blur. SIAM Journal on Scientific Computing. 19(4):1063-1082.
1997. Fast iterative image restoration with a spatially varying PSF. Proceedings of SPIE. 3162(1):388-399.
2003. Sex-lethal splicing autoregulation in vivo: interactions between SEX-LETHAL, the U1 snRNP and U2AF underlie male exon skipping. DevelopmentDevelopment. 130(3):463-471.
2008. Scaffolding and Validation of Bacterial Genome Assemblies Using Optical Restriction Maps. Bioinformatics. 24(10):1229-1235.
2010. Finishing genomes with limited resources: lessons from an ensemble of microbial genomes. BMC Genomics. 11(1):242-242.
2008. Uncovering Genomic Reassortments among Influenza Strains by Enumerating Maximal Bicliques. IEEE International Conference on Bioinformatics and Biomedicine, 2008. BIBM '08. :223-230.
2009. Parametric Complexity of Sequence Assembly: Theory and Applications to Next Generation Sequencing. Journal of Computational Biology. 16(7):897-908.
2003. Refactoring using event-based profiling. First International Workshop on REFactoring: Achievements, Challenges, Effects (REFACE).