Publications
2011. Genome-Wide Survey of Natural Selection on Functional, Structural, and Network Properties of Polymorphic Sites in Saccharomyces Paradoxus. Molecular Biology and EvolutionMol Biol Evol. 28(9):2615-2627.
2010. Young Proteins Experience More Variable Selection Pressures Than Old Proteins. Genome ResearchGenome Res.. 20(11):1574-1581.
1992. Methods in parallel algorithmics and who may need to know them? Algorithms and Computation. :1-4.
1990. Deterministic sampling—a new technique for fast pattern matching. Proceedings of the twenty-second annual ACM symposium on Theory of computing. :170-180.
2002. Two techniques for reconciling algorithm parallelism with memory constraints. Proceedings of the fourteenth annual ACM symposium on Parallel algorithms and architectures. :95-98.
1984. A parallel-design distributed-implementation (PDDI) general-purpose computer. Theoretical Computer Science. 32(1-2):157-172.
1983. Implementation of simultaneous memory address access in models that forbid it. Journal of algorithms. 4(1):45-50.
1991. Can parallel algorithms enhance serial implementation? Parallel Processing Symposium, 1994. Proceedings., Eighth International. :376-385.
2004. PRAM-On-Chip: A Quest for Not-So-Obvious Non-obviousness. Mathematical Foundations of Computer Science 2004Mathematical Foundations of Computer Science 2004. 3153:104-105.
1998. Explicit Multi-Threading (XMT) bridging models for instruction parallelism (extended abstract). Proceedings of the tenth annual ACM symposium on Parallel algorithms and architectures. :140-151.
2008. An Immediate Concurrent Execution (ICE) Abstraction Proposal for Many-Cores. Computer Science Research Works.
2007. Thinking in parallel: Some basic data-parallel algorithms and techniques. UMIACS, University of Maryland, College Park. 1993
1992. Biconnectivity Approximations and Graph Carvings. Proceedings of the Twenty-fourth Annual ACM Symposium on the Theory of Computing, Victoria, British Columbia, Canada, May 4-6, 1992. :759-759.
2000. PRAM-On-Chip Vision. String Processing and Information Retrieval, 2000. SPIRE 2000. Proceedings. Seventh International Symposium on. :260-260.
1998. Project for Developing Computer Science Agenda(s) for High-Performance Computing: An Organizer's Summary. UMIACS-TR-94-129
2007. Towards Realizing a PRAM-On-Chip Vision. Workshop on Highly Parallel Processing on a Chip (HPPC). 28
1984. Finding biconnected components and computing tree functions in logarithmic parallel time. 1998 International Conference on Parallel Architectures and Compilation Techniques, Paris, France, October 12-18, 1998: proceedings. :12-12.
1992. A parallel blocking flow algorithm for acyclic networks. Journal of Algorithms. 13(3):489-501.
2000. A no-busy-wait balanced tree parallel algorithmic paradigm. Proceedings of the twelfth annual ACM symposium on Parallel algorithms and architectures. :147-155.