Publications
2003. The Dog Genome: Survey Sequencing and Comparative Analysis. ScienceScience. 301(5641):1898-1903.
2014. Vibrio metoecus sp. nov., a close relative of Vibrio cholerae isolated from coastal brackish ponds and clinical specimens. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY. (Pt 95616795215116120545121):3208-3214.
2010. Assembly complexity of prokaryotic genomes using short reads. BMC Bioinformatics. 11(1):21-21.
2007. A unified model explaining the offsets of overlapping and near-overlapping prokaryotic genes. Molecular biology and evolution. 24(9):2091-2091.
2011. A cost-aggregating integer linear program for motif finding. Journal of Discrete Algorithms. 9(4):326-334.
2006. A compact mathematical programming formulation for DNA motif finding. Combinatorial Pattern Matching. :233-245.
2009. 2009 Swine-Origin Influenza A (H1N1) Resembles Previous Influenza Isolates. PLoS ONEPLoS ONE. 4(7):e6402-e6402.
1997. Satellite DNA repeat sequence variation is low in three species of burying beetles in the genus ıt Nicrophorus (Coleoptera: Silphidae). Mol Biol Evol. 14(11):1088-1095.
2008. Implicit Flows: Can’t Live with ‘Em, Can’t Live without ‘Em. Information Systems SecurityInformation Systems Security. 5352:56-70.
2011. Temperature regulation of virulence factors in the pathogen Vibrio coralliilyticus. The ISME Journal. 6(4):835-846.
2011. Communicating with Caps: Managing Usage Caps in Home Networks. SIGCOMM Comput. Commun. Rev.. 41(4):470-471.
2011. A Two Degree of Freedom Nanopositioner With Electrothermal Actuator for Decoupled Motion. :447-457.
2002. A history-based test prioritization technique for regression testing in resource constrained environments. Proceedings of the 24th international conference on Software engineering - ICSE '02. :119-119.
2008. Trade-offs in matching jobs and balancing load for distributed desktop grids. Future Generation Computer Systems. 24(5):415-424.
2007. Information-Aware 2^ n-Tree for Efficient Out-of-Core Indexing of Very Large Multidimensional Volumetric Data. Scientific and Statistical Database Management, 2007. SSBDM'07. 19th International Conference on. :9-9.
1998. Salient Frame Detection for Molecular Dynamics Simulations. Scientific Visualization: Interactions, Features, Metaphors. 2:160-175.
2003. Searching large collections of recorded speech: A preliminary study. Proceedings of the American Society for Information Science and Technology. 40(1):330-339.
2001. User modeling for information access based on implicit feedback. 3rd Symposium of ISKO-France, Information Filtering and Automatic Summarisation in networds.
2006. PDR: A Performance Evaluation Method for Foreground-Background Segmentation Algorithms. EURASIP Journal on Applied Signal Processing.
2011. Communicating with caps: managing usage caps in home networks. ACM SIGCOMM Computer Communication Review. 41(4):470-471.