Publications
2010. A survey of link mining tasks for analyzing noisy and incomplete networks. Link Mining: Models, Algorithms, and Applications. :107-133.
2007. Inferring organizational titles in online communication. Statistical Network Analysis: Models, Issues, and New Directions. :179-181.
2007. A dual-view approach to interactive network visualization. Proceedings of the sixteenth ACM conference on Conference on information and knowledge management. :939-942.
2011. Collective graph identification. Proceedings of the 17th ACM SIGKDD international conference on Knowledge discovery and data mining. :87-95.
2006. Multiple range query optimization with distributed cache indexing. Proceedings of the 2006 ACM/IEEE conference on Supercomputing. :100–es-100–es.
2005. Spatial indexing of distributed multidimensional datasets. IEEE International Symposium on Cluster Computing and the Grid, 2005. CCGrid 2005. 2:743-750Vol.2-743-750Vol.2.
2003. Improving access to multi-dimensional self-describing scientific datasets. 3rd IEEE/ACM International Symposium on Cluster Computing and the Grid, 2003. Proceedings. CCGrid 2003. :172-179.
2004. A Comparative Study of Spatial Indexing Techniques for Multidimensional Scientific Datasets. Scientific and Statistical Database Management, International Conference on. :171-171.
2006. DiST: fully decentralized indexing for querying distributed multidimensional datasets. Parallel and Distributed Processing Symposium, 2006. IPDPS 2006. 20th International.
2006. Identifying domain-specific defect classes using inspections and change history. Proceedings of the 2006 ACM/IEEE international symposium on Empirical software engineering. :346-355.
2003. Towards a first vertical prototyping of an extremely fine-grained parallel programming approach. Theory of Computing Systems. 36(5):521-552.
2001. Evaluating the XMT parallel programming model. High-Level Parallel Programming Models and Supportive Environments. :95-108.
2000. Evaluating multi-threading in the prototype XMT environment. Proc. 4th Workshop on Multi-Threaded Execution, Architecture and Compliation (MTEAC2000).
2012. Role of Shrimp Chitin in the Ecology of Toxigenic Vibrio cholerae and Cholera Transmission. Frontiers in Microbiology. 2:260
2002. Image Restoration through Subimages and Confidence Images. Electronic Transactions on Numerical Analysis. 13:22-37.
1998. Restoring Images Degraded by Spatially Variant Blur. SIAM Journal on Scientific Computing. 19(4):1063-1082.
1997. Fast iterative image restoration with a spatially varying PSF. Proceedings of SPIE. 3162(1):388-399.
2003. Sex-lethal splicing autoregulation in vivo: interactions between SEX-LETHAL, the U1 snRNP and U2AF underlie male exon skipping. DevelopmentDevelopment. 130(3):463-471.
2010. Sequencing and Genome Assembly Using Next-Generation Technologies. Computational BiologyComputational Biology. 673:1-17.
2008. Scaffolding and Validation of Bacterial Genome Assemblies Using Optical Restriction Maps. Bioinformatics. 24(10):1229-1235.
2010. Finishing genomes with limited resources: lessons from an ensemble of microbial genomes. BMC Genomics. 11(1):242-242.
2009. Parametric Complexity of Sequence Assembly: Theory and Applications to Next Generation Sequencing. Journal of Computational Biology. 16(7):897-908.