Publications
2003. Phylogenetic analysis reveals five independent transfers of the chloroplast gene ıt rbcL to the mitochondrial genome in angiosperms. Curr Genet. 43(2):131-138.
1998. Pigment composition of putatively achlorophyllous angiosperms. Plant Syst Evol. 210(1-2):105-111.
1995. Sampling properties of DNA sequence data in phylogenetic analysis. Mol Biol Evol. 12(5):814-822.
1994. Transmission patterns of eukaryotic transposable elements - arguments for and against horizontal transfer. Trends Ecol Evol. 9(4):141-145.
1994. Slipped-strand mispairing in a plastid gene: ıt rpoC2 in grasses (Poaceae). Mol Biol Evol. 11(1):1-8.
1999. Genes and other samples of DNA sequence data for phylogenetic inference. The Biological Bulletin. 196(3):345-350.
1998. Nucleotide sequence diversity at the alcohol dehydrogenase 1 locus in wild barley (ıt Hordeum vulgare ssp. ıt spontaneum): an evaluation of the background selection hypothesis. Proc Natl Acad Sci USA. 95(10):5637-5642.
1991. Review of Fundamentals of Molecular Evolution, by Li. W.-H. and D. Graur. Cladistics. 7:310-312.
2003. Comparing bootstrap and posterior probability values in the four-taxon case. Syst Biol. 52(4):477-487.
2004. Simple statistical models predict C-to-U edited sites in plant mitochondrial RNA. BMC Bioinformatics. 5:132-132.
2004. Few amino acid positions in ıt rpoB are associated with most of the rifampin resistance in ıt Mycobacterium tuberculosis. BMC Bioinformatics. 5:137-137.
2004. Applying permutation tests to tree-based statistical models: extending the R package rpart. 2004-24
1992. Copia-like retrotransposons in plants: a brief introduction. The Plant Genetics Newsletter. 8(4):38-41.
2005. Magic bullets and golden rules: data sampling in molecular phylogenetics. Zoology (Jena). 108(4):329-336.
2010. Broader incorporation of bioinformatics in education: opportunities and challenges. Brief Bioinform. 11(537-543)
2009. Measurement methods for fast and accurate blackhole identification with binary tomography. Proceedings of the 9th ACM SIGCOMM conference on Internet measurement conference. :254-266.
2008. Distinguishing persistent failures from transient losses. Proceedings of the 2008 ACM CoNEXT Conference. :50:1–50:2-50:1–50:2.
2005. Interpretation of state sequences in HMM for activity representation. Proc. IEEE Conf. Acoustic Speech and Signal Processing. 2:709-712.
2008. Activity Modeling Using Event Probability Sequences. Image Processing, IEEE Transactions on. 17(4):594-607.
2007. Epitomic Representation of Human Activities. Computer Vision and Pattern Recognition, 2007. CVPR '07. IEEE Conference on. :1-8.
2007. Coarse-to-Fine Event Model for Human Activities. Acoustics, Speech and Signal Processing, 2007. ICASSP 2007. IEEE International Conference on. 1:I-813-I-816-I-813-I-816.
2007. Mixed-state models for nonstationary multiobject activities. EURASIP J. Appl. Signal Process.. 2007(1):106-106.