Publications

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Journal Articles
Baras JS, Ball M, Karne RK, Kelley S, Jang KD, Plaisant C, Roussopoulos N, Stathatos K, Vakhutinsky A, Valluri J.  1996.  Hybrid network management (communication systems). 16th AIAA International Communications Satellite Systems Conference.
Baras JS, Ball M, Karne RK, Kelley S, Jang KD, Plaisant C, Roussopoulos N, Stathatos K, Vakhutinsky A, Valluri J.  1996.  Hybrid network management (communication systems). 16th AIAA International Communications Satellite Systems Conference.
Brown JR, van Dam A, Earnshaw R, Encarnacao J, Guedj R, Preece J, Shneiderman B, Vince J.  1999.  Human-centered computing, online communities, and virtual environments. IEEE Computer Graphics and Applications. 19(6):70-74.
Valancius V, Lumezanu C, Feamster N, Johari R, Vazirani VV.  2011.  How Many Tiers? Pricing in the Internet Transit Market SIGCOMM-Computer Communication Review. 41(4):194-194.
Valancius V, Lumezanu C, Feamster N, Johari R, Vazirani VV.  2011.  How Many Tiers? Pricing in the Internet Transit Market SIGCOMM-Computer Communication Review. 41(4):194-194.
Schatz MC, Trapnell C, Delcher AL, Varshney A.  2007.  High-throughput sequence alignment using Graphics Processing Units. BMC Bioinformatics. 8(1):474-474.
Tobin-Hochstadt S, Van Horn D.  2011.  Higher-Order Symbolic Execution via Contracts. arXiv:1103.1362 [cs].
Chang CF, Varshney A, Ge QJ.  2001.  Haptic and aural rendering of a virtual milling process. ASME 2001 Design Engineering Technical Conference and Computers and Information in Engineering Conference, Pittsburgh, PA. :105-113.
Varshney A.  2001.  Guest Editor's Introduction: Special Issue on Visualization 2000. IEEE Transactions on Visualization and Computer Graphics. 7(3):193-194.
Gordon S, Katz J, Vaikuntanathan V.  2010.  A group signature scheme from lattice assumptions. Advances in Cryptology-ASIACRYPT 2010. :395-412.
Pruzzo C, Vezzulli L, Colwell RR.  2008.  Global impact of Vibrio cholerae interactions with chitin. Environmental Microbiology. 10(6):1400-1410.
Hao X, Varshney A.  2006.  Geometry-guided computation of 3D electrostatics for large biomolecules. Computer Aided Geometric Design. 23(6):545-557.
Lee CH, Hao X, Varshney A.  2006.  Geometry-dependent lighting. Visualization and Computer Graphics, IEEE Transactions on. 12(2):197-207.
Dupont CL, Rusch DB, Yooseph S, Lombardo M-J, R Richter A, Valas R, Novotny M, Yee-Greenbaum J, Selengut JD, Haft DH et al..  2012.  Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage.. ISME J. 6(6):1186-99.
Dupont CL, Rusch DB, Yooseph S, Lombardo M-J, R Richter A, Valas R, Novotny M, Yee-Greenbaum J, Selengut JD, Haft DH et al..  2012.  Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage.. ISME J. 6(6):1186-99.
Vishnoi A, Sethupathy P, Simola D, Plotkin JB, Hannenhalli S.  2011.  Genome-Wide Survey of Natural Selection on Functional, Structural, and Network Properties of Polymorphic Sites in Saccharomyces Paradoxus. Molecular Biology and EvolutionMol Biol Evol. 28(9):2615-2627.
Yang S, Wang K, Valladares O, Hannenhalli S, Bucan M.  2007.  Genome-wide expression profiling and bioinformatics analysis of diurnally regulated genes in the mouse prefrontal cortex. Genome Biology. 8(11):R247-R247.
Lewinski MK, Bisgrove D, Shinn P, Chen H, Hoffmann C, Hannenhalli S, Verdin E, Berry CC, Ecker JR, Bushman FD.  2005.  Genome-Wide Analysis of Chromosomal Features Repressing Human Immunodeficiency Virus Transcription. Journal of VirologyJ. Virol.. 79(11):6610-6619.
El-Sayed NM, Myler PJ, Bartholomeu DC, Nilsson D, Aggarwal G, Tran A-N, Ghedin E, Worthey EA, Delcher AL, Blandin G et al..  2005.  The Genome Sequence of Trypanosoma cruzi, Etiologic Agent of Chagas Disease. Science. 309(5733):409-415.
El-Sayed NM, Myler PJ, Bartholomeu DC, Nilsson D, Aggarwal G, Tran A-N, Ghedin E, Worthey EA, Delcher AL, Blandin G et al..  2005.  The Genome Sequence of Trypanosoma Cruzi, Etiologic Agent of Chagas Disease. ScienceScience. 309(5733):409-415.
El-Sayed NM, Myler PJ, Bartholomeu DC, Nilsson D, Aggarwal G, Tran A-N, Ghedin E, Worthey EA, Delcher AL, Blandin G et al..  2005.  The Genome Sequence of Trypanosoma cruzi, Etiologic Agent of Chagas Disease. Science. 309(5733):409-415.
El-Sayed NM, Myler PJ, Bartholomeu DC, Nilsson D, Aggarwal G, Tran A-N, Ghedin E, Worthey EA, Delcher AL, Blandin G et al..  2005.  The Genome Sequence of Trypanosoma Cruzi, Etiologic Agent of Chagas Disease. ScienceScience. 309(5733):409-415.
Carlton JM, Angiuoli SV, Suh BB, Kooij TW, Pertea M, Silva JC, Ermolaeva MD, Allen JE, Selengut JD, Koo HL et al..  2002.  Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii. Nature. 419(6906):512-519.
Carlton JM, Angiuoli SV, Suh BB, Kooij TW, Pertea M, Silva JC, Ermolaeva MD, Allen JE, Selengut JD, Koo HL et al..  2002.  Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii. Nature. 419(6906):512-519.
Clayton C, Adams M, Almeida R, Baltz T, Barrett M, Bastien P, Belli S, Beverley S, Biteau N, Blackwell J et al..  1998.  Genetic nomenclature for Trypanosoma and Leishmania.. Mol Biochem Parasitol. 97(1-2):221-4.

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