Publications

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Journal Articles
Landau GM, Vishkin U, Nussinov R.  1987.  An efficient string matching algorithm with K substitutions for nucleotide and amino acid sequences*. Journal of theoretical biology. 126(4):483-490.
Landau GM, Vishkin U, Nussinov R.  1986.  An efficient string matching algorithm with k differences for nudeotide and amino acid sequences. Nucleic acids research. 14(1):31-31.
Hao X, Varshney A.  2004.  Efficient solution of poisson-boltzmann equation for electrostatics of large molecules. High-Performance Computing Symposium (April 2004). :71-76.
Amir A, Landau GM, Vishkin U.  1992.  Efficient pattern matching with scaling. Journal of Algorithms. 13(1):2-32.
Vishkin U.  1985.  On efficient parallel strong orientation. Information Processing Letters. 20(5):235-240.
Tarjan RE, Vishkin U.  1985.  An efficient parallel biconnectivity algorithm. SIAM Journal on Computing. 14:862-862.
Landau GM, Vishkin U.  1986.  Efficient Parallel and Serial String Matching. Computer Science Department Technical Report. 221
Perl Y, Vishkin U.  1985.  Efficient implementation of a shifting algorithm. Discrete applied mathematics. 12(1):71-80.
Vishkin U.  1983.  Efficient distributed orientation algorithm.. IEEE TRANS. INFO. THEORY.. 29(4):624-628.
Ryabov YE, Geraghty C, Varshney A, Fushman D.  2006.  An Efficient Computational Method for Predicting Rotational Diffusion Tensors of Globular Proteins Using an Ellipsoid Representation. Journal of the American Chemical Society. 128(48):15432-15444.
Wang Q, JaJa JF, Varshney A.  2007.  An efficient and scalable parallel algorithm for out-of-core isosurface extraction and rendering. Journal of Parallel and Distributed Computing. 67(5):592-603.
Dickinson BC, Varadan R, Fushman D.  2007.  Effects of cyclization on conformational dynamics and binding properties of Lys48-linked di-ubiquitin. Protein Science. 16(3):369-378.
Vishkin U, Wigderson A.  1983.  Dynamic parallel memories. Information and control. 56(3):174-182.
Vezzulli L, Guzmán CA, Colwell RR, Pruzzo C.  2008.  Dual role colonization factors connecting Vibrio cholerae's lifestyles in human and aquatic environments open new perspectives for combating infectious diseases. Current Opinion in Biotechnology. 19(3):254-259.
Ge QJ, Varshney A, Menon JP, Chang CF.  1998.  Double quaternions for motion interpolation. Proceedings of the ASME Design Engineering Technical Conference.
Kirkness EF, Bafna V, Halpern AL, Levy S, Remington K, Rusch DB, Delcher AL, Pop M, Wang W, Fraser CM et al..  2003.  The Dog Genome: Survey Sequencing and Comparative Analysis. ScienceScience. 301(5641):1898-1903.
Raasi S, Varadan R, Fushman D, Pickart CM.  2005.  Diverse polyubiquitin interaction properties of ubiquitin-associated domains. Nature Structural & Molecular Biology. 12(8):708-714.
Varshney A, Kalaiah A.  2001.  Differential point rendering. Proceedings of 12th Eurographics Workshop on Rendering. :139-50.
Kutten S, Peleg D, Vishkin U.  2003.  Deterministic Resource Discovery in Distributed Networks. Theory of Computing Systems. 36(5):479-495.
Cole R, Vishkin U.  1986.  Deterministic coin tossing with applications to optimal parallel list ranking. Information and Control. 70(1):32-53.
Cole R, Vishkin U.  1994.  On the detection of robust curves. CVGIP: Graphical Models and Image Processing. 56(3):189-204.
Cheng H-C, Cardone A, Jain S, Krokos E, Narayan K, Subramaniam S, Varshney A.  2018.  Deep-learning-assisted Volume Visualization. IEEE Transactions on Visualization and Computer Graphics. :1-1.
Sahinalp SC, Vishkin U.  1995.  Data compression using locally consistent parsing. TechnicM report, University of Maryland Department of Computer Science.
Essien K, Vigneau S, Apreleva S, Singh LN, Bartolomei MS, Hannenhalli S.  2009.  CTCF binding site classes exhibit distinct evolutionary, genomic, epigenomic and transcriptomic features. Genome Biology. 10(11):R131-R131.
Eddins MJ, Varadan R, Fushman D, Pickart CM, Wolberger C.  2007.  Crystal Structure and Solution NMR Studies of Lys48-linked Tetraubiquitin at Neutral pH. Journal of Molecular Biology. 367(1):204-211.

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