Publications

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Journal Articles
Lee B, Parr CS, Plaisant C, Bederson BB, Veksler VD, Gray WD, Kotfila C.  2006.  TreePlus: Interactive Exploration of Networks with Enhanced Tree Layouts. Visualization and Computer Graphics, IEEE Transactions on. 12(6):1414-1426.
Skalka C, Smith S, Van Horn D.  2005.  A Type and Effect System for Flexible Abstract Interpretation of Java: (Extended Abstract). Electronic Notes in Theoretical Computer Science. 131:111-124.
Verma R, Peters NR, D'Onofrio M, Tochtrop GP, Sakamoto KM, Varadan R, Zhang M, Coffino P, Fushman D, Deshaies RJ et al..  2004.  Ubistatins Inhibit Proteasome-Dependent Degradation by Binding the Ubiquitin Chain. Science. 306(5693):117-120.
Verma R, Peters NR, D'Onofrio M, Tochtrop GP, Sakamoto KM, Varadan R, Zhang M, Coffino P, Fushman D, Deshaies RJ et al..  2004.  Ubistatins Inhibit Proteasome-Dependent Degradation by Binding the Ubiquitin Chain. Science. 306(5693):117-120.
Baby T, Kim Y, Varshney A.  2005.  Unsupervised learning applied to progressive compression of time-dependent geometry. Computers & Graphics. 29(3):451-461.
Turaga P, Veeraraghavan A, Chellappa R.  2009.  Unsupervised view and rate invariant clustering of video sequences. Computer Vision and Image Understanding. 113(3):353-371.
Vanniamparampil AJ, Shneiderman B, Plaisant C, Rose A.  1998.  User Interface Reengineering: A Diagnostic Approach. Technical Reports of the Computer Science Department.
Plaisant C, Rose A, Shneiderman B, Vanniamparampil AJ.  1997.  User Interface Reengineering: Low-Effort, High-Payoff Strategies. IEEE Software. 14(4):66-72.
Hierons RM, Krause P, Lüttgen G, Simons AJH, Vilkomir S, Woodward MR, Zedan H, Bogdanov K, Bowen JP, Cleaveland R et al..  2009.  Using formal specifications to support testing. ACM Computing Surveys. 41:1-76.
Stantchev G, Juba D, Dorland W, Varshney A.  2009.  Using Graphics Processors for High-Performance Computation and Visualization of Plasma Turbulence. Computing in Science Engineering. 11(2):52-59.
Vishkin U.  2011.  Using simple abstraction to reinvent computing for parallelism. Commun. ACM. 54(1):75-85.
Minkah N, Hwang Y, Perry K, Van Duyne GD, Hendrickson R, Lefkowitz EJ, Hannenhalli S, Bushman FD.  2007.  Variola virus topoisomerase: DNA cleavage specificity and distribution of sites in Poxvirus genomes. Virology. 365(1):60-69.
Kim Y, Lee C H, Varshney A.  2006.  Vertex–transformation streams. Graphical Models. 68(4):371-383.
Binsztein N, Costagliola MC, Pichel M, Jurquiza V, Ramírez FC, Akselman R, Vacchino M, Huq A, Colwell RR.  2004.  Viable but Nonculturable Vibrio Cholerae O1 in the Aquatic Environment of Argentina. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 70(12):7481-7486.
Ramachandran M, Veeraraghavan A, Chellappa R.  2008.  Video stabilization and mosaicing. The Essential Guide to Video Processing,. :109-138.
El-Sana J, Varshney A.  1999.  View-dependent topology simplification. Virtual Environments. 99:11-22.
Darsa L, Costa B, Varshney A.  1998.  Walkthroughs of complex environments using image-based simplification. Computers & Graphics. 22(1):55-69.
Li ST, Ge QJ, Varshney A.  2001.  Web-based interactive design of freeform motions. Proceedings of the ASME 2001 Design Engineering Technical Conferences and Computers and Information in Engineering Conference.
Ricaldi JN, Fouts DE, Selengut JD, Harkins DM, Patra KP, Moreno A, Lehmann JS, Purushe J, Sanka R, Torres M et al..  2012.  Whole genome analysis of Leptospira licerasiae provides insight into leptospiral evolution and pathogenicity.. PLoS Negl Trop Dis. 6(10):e1853.
Vishnoi A, Kryazhimskiy S, Bazykin GA, Hannenhalli S, Plotkin JB.  2010.  Young Proteins Experience More Variable Selection Pressures Than Old Proteins. Genome ResearchGenome Res.. 20(11):1574-1581.
Bederson BB, Hollan JD, Stewart J, Rogers D, Druin A, Vick D, Ring L, Grose E, Forsythe C.  1997.  A zooming web browser. Human Factors in Web Development.
Patents
Vishkin U, Nuzman JF.  2004.  Circuit architecture for reduced-synchrony on-chip interconnect. 10/166,008(6768336)
Vishkin U.  2010.  Computer Memory Architecture for Hybrid Serial and Parallel Computing Systems. 12/721,252
M. Wu, Joyce RA, Vetro A, Wong H-S, Guan L, Kung S-Y.  2005.  Dynamic network resource allocation using multimedia content features and .... 09/795,952(6947378)
Vishkin U.  2004.  OPTICAL INTERCONNECT STRUCTURE IN A COMPUTER SYSTEM. (WO/2004/083904)

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