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2009. Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples. PLoS Comput Biology. 5(4):e1000352-e1000352.
2010. Identification of Pathogenic Vibrio Species by Multilocus PCR-Electrospray Ionization Mass Spectrometry and Its Application to Aquatic Environments of the Former Soviet Republic of Georgia. Applied and Environmental MicrobiologyAppl. Environ. Microbiol.. 76(6):1996-2001.
2007. Making models match: Replicating an agent-based model. Journal of Artificial Societies and Social Simulation. 10(4):2-2.
2005. Automatic Mining of Source Code Repositories to Improve Bug Finding Techniques. IEEE Transactions on Software Engineering. 31(6):466-480.
2005. Recovering system specific rules from software repositories. SIGSOFT Softw. Eng. Notes. 30(4):1-5.
1995. Stochastic completion fields: a neural model of illusory contour shape and salience. Computer Vision, 1995. Proceedings., Fifth International Conference on. :408-415.
2004. Bug driven bug finders. Proceedings of the International Workshop on Mining Software Repositories. :70-74.
1997. Stochastic completion fields: A neural model of illusory contour shape and salience. Neural Computation. 9(4):837-858.
2004. Interactive binary instrumentation. Second International Workshop on Remote Analysis and Measurement of Software Systems (RAMSS).
1992. The Dynamic HomeFinder: Evaluating dynamic queries in a real-estate information exploration system. Proceedings of the 15th annual international ACM SIGIR conference on Research and development in information retrieval. :338-346.
1999. The dynamic homefinder: evaluating dynamic queries in a real-estate information exploration system. Materialized views. :125-139.
2007. Functional connectivity in fMRI: A modeling approach for estimation and for relating to local circuits. Neuroimage. 34(3):1093-1107.
2004. Using distributed partial memories to improve self-organizing collective movements. Systems, Man, and Cybernetics, Part B: Cybernetics, IEEE Transactions on. 34(4):1697-1707.
2011. A Constraint-Reduced Variant of Mehrotra's Predictor-Corrector Algorithm. Computational Optimization and Applications.
2011. Ability-based design: Concept, principles and examples. ACM Transactions on Accessible Computing (TACCESS). 3(3)
2002. Binarization of low quality text using a Markov random field model. Pattern Recognition, 2002. Proceedings. 16th International Conference on. 3:160-163vol.3-160-163vol.3.
1999. Predicting the CPU availability of time-shared Unix systems on the computational grid. The Eighth International Symposium on High Performance Distributed Computing, 1999. Proceedings. :105-112.
1999. Running EveryWare on the computational grid. Proceedings of the 1999 ACM/IEEE conference on Supercomputing (CDROM). :6–es-6–es.
1997. Implementing a performance forecasting system for metacomputing: the Network Weather Service. Proceedings of the 1997 ACM/IEEE conference on Supercomputing (CDROM). :1-19.
1998. Controlling communication in distributed planning using irrelevance reasoning. Proceedings of the fifteenth national/tenth conference on Artificial intelligence/Innovative applications of artificial intelligence. :868-874.
2011. Graph Analytics-Lessons Learned and Challenges Ahead. IEEE Computer Graphics and Applications. 31(5):18-29.