Publications

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2015
Cardone A, Chalfoun J, Peskin A, Bajcsy P, Kociolek M, Bhadriraju K, Brady M.  2015.  Segmentation and sub-cellular feature-based analysis of microscopy images. BioImage Informatics Conference .
Bajcsy P, Cardone A, Chalfoun J, Halter M, Juba D, Kociolek M, Majurski M, Peskin A, Simon C, Simon M et al..  2015.  Survey statistics of automated segmentations applied to optical imaging of mammalian cells. BMC bioinformatics. 16:1.
Alivisatos A.P, Blaser M.J, Brodie E.L, Chun M., Dangl J.L, Donohue T.J, Dorrestein P.C, Gilbert J.A, Green J.L, Jansson J.K et al..  2015.  A unified initiative to harness Earth's microbiomes. Science. (62607551614341176):507-508.
Zaitchik B.F, Guikema S.D, Haley B.J, Taviani E., Chen A., Brown M.E., Huq A., Colwell RR.  2015.  Use of Environmental Parameters to Model Pathogenic Vibrios in Chesapeake Bay. Journal of Environmental Informatics.
2014
Dachman-Soled D, Mahmoody M, Malkin T.  2014.  Can Optimally-Fair Coin Tossing Be Based on One-Way Functions? Theory of Cryptography. :217-239.
Akanda AS, Jutla AS, Colwell RR.  2014.  Global diarrhoea action plan needs integrated climate-based surveillance. The Lancet Global Health. 2(2):e69-e70.
Kirchberger P.C, Turnsek M., Hunt D.E, Haley B.J, Colwell RR, Polz M.F, Tarr C.L, Boucher Y..  2014.  Vibrio metoecus sp. nov., a close relative of Vibrio cholerae isolated from coastal brackish ponds and clinical specimens. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY. (Pt 95616795215116120545121):3208-3214.
Ceccarelli D, Colwell RR.  2014.  Vibrio ecology, pathogenesis, and evolution. Frontiers in Microbiology.
Hasan NA, Young BA, Minard-Smith AT, Saeed K, Li H, Heizer EM, McMillan NJ, Isom R, Abdullah AShakur, Bornman DM et al..  2014.  Microbial Community Profiling of Human Saliva Using Shotgun Metagenomic Sequencing. PLoS ONE. (5):e97699.
Dachman-Soled D.  2014.  On Minimal Assumptions for Sender-Deniable Public Key Encryption. Public-Key Cryptography – PKC 2014. :574-591.
Haley BJ, Kokashvili T, Tskshvediani A, Janelidze N, Mitaishvili N, Grim CJ, Constantin_de_Magny G, Chen AJ, Taviani E, Eliashvili T et al..  2014.  Molecular diversity and predictability of Vibrio parahaemolyticus along the Georgian coastal zone of the Black Sea. Frontiers in Microbiology. 5
Alam M, Rashed SM, Bin Mannan S, Islam T, Lizarraga-Partida ML, Delgado G, Morales-Espinosa R, Mendez JLuis, Navarro A, Watanabe H et al..  2014.  Occurrence in Mexico, 1998–2008, of Vibrio cholerae CTX + El Tor carrying an additional truncated CTX prophage. Proceedings of the National Academy of Sciences. 111(27):9917-9922.
Azarian T, Ali A, Johnson JA, Mohr D, Prosperi M, Veras NM, Jubair M, Strickland SL, Rashid MH, Alam MT et al..  2014.  Phylodynamic Analysis of Clinical and Environmental Vibrio cholerae Isolates from Haiti Reveals Diversification Driven by Positive Selection. mBio. (6)
Molden RC, Goya J, Khan Z, Garcia BA.  2014.  Stable isotope labeling of phosphoproteins for large-scale phosphorylation rate determination. Molecular & Cellular Proteomics.
Budowle B, Connell ND, Bielecka-Oder A, Colwell RR, Corbett CR, Fletcher J, Forsman M, Kadavy DR, Markotic A, Morse SA et al..  2014.  Validation of high throughput sequencing and microbial forensics applications. Investigative Genetics. 5(1):9.
D. Grimes J, Ford TE, Colwell RR, Baker-Austin C, Martinez-Urtaza J, Subramaniam A, Capone DG.  2014.  Viewing Marine Bacteria, Their Activity and Response to Environmental Drivers from Orbit. Microbial Ecology. (38):489-500.
2013
Dachman-Soled D, Malkin T, Raykova M, Venkitasubramaniam M.  2013.  Adaptive and Concurrent Secure Computation from New Adaptive, Non-malleable Commitments. Advances in Cryptology - ASIACRYPT 2013. :316-336.
Findlater L, Froehlich J, Fattal K, Wobbrock JO, Dastyar T.  2013.  Age-Related Differences in Performance with Touchscreens Compared to Traditional Mouse Input. CHI 2013 To Appear.
Nguyen VA, Hu Y, Boyd-Graber J.  2013.  Argviz: Interactive Visualization of Topic Dynamics in Multi-party Conversations. Human Language Technologies: The 2013 Annual Conference of the North American Chapter of the Association for Computational Linguistics.
Fong A, Ashktorab Z, Froehlich J.  2013.  Bear-with-me: an embodied prototype to explore tangible two-way exchanges of emotional language. CHI'13 Extended Abstracts on Human Factors in Computing Systems.
Hu Y, Boyd-Graber J, III HDaume, Z Ying I.  2013.  Binary to Bushy: Bayesian Hierarchical Clustering with the Beta Coalescent. :1079-1087.
Agrawal M, Doermann D.  2013.  Clutter noise removal in binary document images. International Journal on Document Analysis and Recognition (IJDAR). 16(4):351-369.
Hara K, Le V, Froehlich J.  2013.  Combining Crowdsourcing and Google Street View to Identify Street-level Accessibility Problems. CHI 2013 To Appear.
Preston ND, Daszak P, Colwell RR.  2013.  Current Topics in Microbiology and Immunology One Health: The Human-Animal-Environment Interfaces in Emerging Infectious Diseases The Human Environment Interface: Applying Ecosystem Concepts to Health. 365:83-100.
Kumar J, Ye P, Doermann D.  2013.  A Dataset for Quality Assessment of Camera Captured Document Images.

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