Publications

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Journal Articles
Zelkowitz MV.  1978.  Perspectives in Software Engineering. ACM Comput. Surv.. 10(2):197-216.
Kim Y, Varshney A.  2008.  Persuading Visual Attention through Geometry. Visualization and Computer Graphics, IEEE Transactions on. 14(4):772-782.
Chang XC, Paige CC, Stewart G.W.  1997.  Perturbation analysis for the QR decomposition. SIAM Journal on Matrix Analysis and Applications. 18:775-791.
Chalidabhongse TH, Kim K, Harwood D, Davis LS.  2003.  A perturbation method for evaluating background subtraction algorithms. Joint IEEE International Workshop on Visual Surveillance and Performance Evaluation of Tracking and Surveillance (VS-PETS).
Elman H.  1997.  Perturbation of eigenvalues of preconditioned Navier-Stokes operators. SIAM Journal on Matrix Analysis and Applications. 18(3):733-751.
Stewart G.W.  1997.  On the Perturbation of LU and Cholesky Factors. IMA Journal of Numerical AnalysisIMA J Numer Anal. 17(1):1-6.
Bertotti G, Mayergoyz ID, Serpico C.  2002.  Perturbation technique for LLG dynamics in uniformly magnetized bodies subject to RF fields. Magnetics, IEEE Transactions on. 38(5):2403-2405.
Caceres A, Shang F, Wawrousek E, Liu Q, Avidan O, Cvekl A, Yang Y, Haririnia A, Storaska A, Fushman D et al..  2010.  Perturbing the Ubiquitin Pathway Reveals How Mitosis Is Hijacked to Denucleate and Regulate Cell Proliferation and Differentiation In Vivo. PLoS ONEPLoS ONE. 5(10):e13331-e13331.
Reggia JA, Edwards M.  1990.  Phase transitions in connectionist models having rapidly varying connection strengths. Neural Computation. 2(4):523-535.
Shneiderman B, Kang H, Kules B, Plaisant C, Rose A, Rucheir R.  2002.  A photo history of SIGCHI: evolution of design from personal to public. interactions. 9(3):17-23.
Shneiderman B.  2005.  A Photo History of SIGCHI: Evolution of Design from Personal to Public (2002). Institute for Systems Research Technical Reports.
Basri R, Jacobs DW, Kemelmacher I.  2007.  Photometric stereo with general, unknown lighting. International Journal of Computer Vision. 72(3):239-257.
Azarian T, Ali A, Johnson JA, Mohr D, Prosperi M, Veras NM, Jubair M, Strickland SL, Rashid MH, Alam MT et al..  2014.  Phylodynamic Analysis of Clinical and Environmental Vibrio cholerae Isolates from Haiti Reveals Diversification Driven by Positive Selection. mBio. (6)
García-Varela M, Cummings MP, Pérez-Ponce de León G, Gardner SL, Laclette JP.  2002.  Phylogenetic analysis based on 18S ribosomal RNA gene sequences supports the existence of class Polyacanthocephala (Acanthocephala). Mol Phylogenet Evol. 23(2):288-292.
Cummings MP, Nugent JM, Olmstead RG, Palmer JD.  2003.  Phylogenetic analysis reveals five independent transfers of the chloroplast gene ıt rbcL to the mitochondrial genome in angiosperms. Curr Genet. 43(2):131-138.
Choi SY, Rashed SM, Hasan NA, Alam M, Islam T, Sadique A, Johura F-T, Eppinger M, Ravel J, Huq A et al..  2016.  Phylogenetic Diversity of Vibrio cholerae Associated with Endemic Cholera in Mexico from 1991 to 2008. mBio. 7(2)
Eng KH, Corrada Bravo H, Keleş S.  2009.  A phylogenetic mixture model for the evolution of gene expression. Molecular biology and evolution. 26(10):2363-2363.
García-Varela M, Pérez-Ponce de León G, de la Torre P, Cummings MP, Sarma SS, Laclette JP.  2000.  Phylogenetic relationships of Acanthocephala based on analysis of 18S ribosomal RNA gene sequences. J Mol Evol. 50(6):532-540.
Förster H, Cummings MP, Coffey MD.  2000.  Phylogenetic relationships of ıt Phytophthora species based on ribosomal ITS I DNA sequence analysis with emphasis on Waterhouse groups V and VI. Mycol Res. 104:1055-1061.
Campos A, Cummings MP, Reyes JL, Laclette JP.  1998.  Phylogenetic relationships of platyhelminthes based on 18S ribosomal gene sequences. Mol Phylogenet Evol. 10(1):1-10.
Wu M.  2010.  Picturing signal processing [From the Editor]. Signal Processing Magazine, IEEE. 27(1):2-3.
Cummings MP, Welschmeyer NA.  1998.  Pigment composition of putatively achlorophyllous angiosperms. Plant Syst Evol. 210(1-2):105-111.
Hochstein L, Basili VR, Vishkin U, Gilbert J.  2008.  A pilot study to compare programming effort for two parallel programming models. Journal of Systems and Software. 81(11):1920-1930.
Seshadri A, Luk M, Elaine Shi, Perrig A, van Doorn L, Khosla P.  2005.  Pioneer: verifying code integrity and enforcing untampered code execution on legacy systems. ACM SIGOPS Operating Systems Review. 39(5):1-16.
Roussopoulos N, Kang H.  1991.  A pipeline N-way join algorithm based on the 2-way semijoin program. IEEE Transactions on Knowledge and Data Engineering. 3(4):486-495.

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