Publications

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Hannenhalli S, Perumalla K, Chandrasekharan N, Sridhar R.  1993.  A distributed algorithm for ear decomposition. , Fifth International Conference on Computing and Information, 1993. Proceedings ICCI '93. :180-184.
Hannenhalli S, Chappey C, Koonin EV, Pevzner PA.  1995.  Genome Sequence Comparison and Scenarios for Gene Rearrangements: A Test Case. Genomics. 30(2):299-311.
Hannenhalli S, Pevzner P.  1995.  Towards a computational theory of genome rearrangements. Computer Science TodayComputer Science Today. 1000:184-202.
Hannenhalli S, Russell RB.  2001.  Analysis and prediction of protein functional sub-types from protein sequence alignments. EP20000203764(EP1096411)
Hannenhalli S.  1996.  Polynomial-time algorithm for computing translocation distance between genomes. Discrete Applied Mathematics. 71(1–3):137-151.
Hannenhalli S.  1995.  Transforming men into mice (a computational theory of genome rearrangements).
Hannenhalli S.  2008.  Eukaryotic Transcription Factor Binding Sites—modeling and Integrative Search Methods. BioinformaticsBioinformatics. 24(11):1325-1331.
Hannenhalli S, Pevzner P.  1996.  To cut… or not to cut (applications of comparative physical maps in molecular evolution). Proceedings of the seventh annual ACM-SIAM symposium on Discrete algorithms. :304-313.
Hannenhalli S, Russell RB.  2000.  Analysis and prediction of functional sub-types from protein sequence alignments. Journal of Molecular Biology. 303(1):61-76.
Hannenhalli S.  1995.  Polynomial-time algorithm for computing translocation distance between genomes. Combinatorial Pattern MatchingCombinatorial Pattern Matching. 937:162-176.
Hannenhalli S.  2007.  Eukaryotic Transcriptional Regulation: Signals, Interactions, and Modules. Computational genomics: current methods. :21-21.
Hannenhalli S, Pevzner PA.  1999.  Transforming cabbage into turnip: polynomial algorithm for sorting signed permutations by reversals. J. ACM. 46(1):1-27.
Hannenhalli S, Wang L-S.  2005.  Enhanced position weight matrices using mixture models. Bioinformatics. 21(Suppl 1):i204-i212-i204-i212.
Hannenhalli S, Putt ME, Gilmore JM, Wang J, Parmacek MS, Epstein JA, Morrisey EE, Margulies KB, Cappola TP.  2006.  Transcriptional Genomics Associates FOX Transcription Factors With Human Heart Failure. Circulation. 114(12):1269-1276.
Hannenhalli S.  2006.  Invited Talk: Deciphering Gene Regulatory Networks by in silico approaches. 6th International Workshop on Data Mining in Bioinformatics (BIOKDD06). :31-31.
Hannenhalli S, Feldman W, Lewis HF, Skiena SS, Pevzner PA.  1996.  Positional sequencing by hybridization. Computer applications in the biosciences : CABIOS. 12(1):19-24.
Hannenhalli S, Pevzner P.  1995.  Transforming cabbage into turnip: polynomial algorithm for sorting signed permutations by reversals. Proceedings of the twenty-seventh annual ACM symposium on Theory of computing. :178-189.
Hannenhalli S, Hubbell E, Lipshutz R, Pevzner P.  2002.  Combinatorial Algorithms for Design of DNA Arrays. Chip TechnologyChip Technology. 77:1-19.
Han B, Ji L, Lee S, Miller RR, Bhattacharjee B.  2009.  Channel Access Throttling for Overlapping BSS Management. Communications, 2009. ICC '09. IEEE International Conference on. :1-6.
Han B, Davis LS.  2006.  Semi-Parametric Model-Based Clustering for DNA Microarray Data. Pattern Recognition, 2006. ICPR 2006. 18th International Conference on. 3:324-327.
Han B, Yang C, Duraiswami R, Davis LS.  2005.  Bayesian filtering and integral image for visual tracking. Proceedings of the Worshop on Image Analysis for Multimedia Interactive Services (WIAMIS'05).
Han B, Comaniciu D, Zhu Y, Davis LS.  2008.  Sequential Kernel Density Approximation and Its Application to Real-Time Visual Tracking. Pattern Analysis and Machine Intelligence, IEEE Transactions on. 30(7):1186-1197.
Han B, Davis LS.  2004.  Object tracking by adaptive feature extraction. Image Processing, 2004. ICIP '04. 2004 International Conference on. 3:1501-1504Vol.3-1501-1504Vol.3.
Han B, Hui P, Kumar VSA, Marathe MV, Shao J, Srinivasan A.  2012.  Mobile Data Offloading through Opportunistic Communications and Social Participation. Mobile Computing, IEEE Transactions on. 11(5):821-834.
Han B, Schulman A, Gringoli F, Spring N, Bhattacharjee B, Nava L, Ji L, Lee S, Miller R.  2010.  Maranello: practical partial packet recovery for 802.11. Proceedings of the 7th USENIX conference on Networked systems design and implementation. :14-14.

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